public class Znosko08mm extends ZnoskoMethod implements NamedMethod
| Modifier and Type | Field and Description |
|---|---|
static java.lang.String |
defaultFileName
String defaultFileName : default name for the xml file containing the thermodynamic parameters for single mismatch
|
formulaEnthalpycollector, fileName| Constructor and Description |
|---|
Znosko08mm() |
| Modifier and Type | Method and Description |
|---|---|
ThermoResult |
computeThermodynamics(NucleotidSequences sequences,
int pos1,
int pos2,
ThermoResult result) |
java.lang.String |
getName()
Gets the full name of the method.
|
void |
initialiseFileName(java.lang.String methodName)
If a file name is entered by the user, the file name of the model becomes the file name entered by the user,
otherwise the default file name of the model is used.
|
boolean |
isApplicable(Environment environment,
int pos1,
int pos2) |
correctPositions, isMissingParametersgetCollector, getData, getDataFileName, loadData, loadFilepublic static java.lang.String defaultFileName
public boolean isApplicable(Environment environment, int pos1, int pos2)
isApplicable in interface PatternComputationMethodisApplicable in class ZnoskoMethodpublic ThermoResult computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)
computeThermodynamics in interface PatternComputationMethodcomputeThermodynamics in class ZnoskoMethodsequences - which contains the sequences entered by the user.result - which contains the computed enthalpy, entropy and melting temperature.public void initialiseFileName(java.lang.String methodName)
PatternComputationMethodinitialiseFileName in interface PatternComputationMethodinitialiseFileName in class PatternComputationmethodName - : method or model name entered by the user.public java.lang.String getName()
getName in interface NamedMethod